Effect of myeloid specific Trem2 knockout in hepatocellular carcinoma after anti-PD-1 therapy
Direct links to NCBI, no account and no request form: the whole study as GSE291235_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 30 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1232627. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 30 samples.
10 replicated groups read from 30 sample titles; they account for 30 of them. Check it against the sample list below before relying on it.
- GSM8827844 Liver tumor, Cre_PD1, rep1
- GSM8827845 Liver tumor, Cre_PD1, rep2
- GSM8827846 Liver tumor, Cre_PD1, rep3
- GSM8827847 Liver tumor, MKO_PD1, rep1
- GSM8827848 Liver tumor, MKO_PD1, rep2
- GSM8827849 Liver tumor, MKO_PD1, rep3
- GSM8831335 Liver tumor, Cre_PD1, H3K36ac rep1
- GSM8831336 Liver tumor, Cre_PD1, H3K36ac rep2
- GSM8831337 Liver tumor, Cre_PD1, H3K36ac rep3
- GSM8831338 Liver tumor, Cre_PD1, Input rep1
- GSM8831339 Liver tumor, Cre_PD1, Input rep2
- GSM8831340 Liver tumor, Cre_PD1, Input rep3
- GSM8831341 Liver tumor, MKO_PD1, H3K36ac rep1
- GSM8831342 Liver tumor, MKO_PD1, H3K36ac rep2
- GSM8831343 Liver tumor, MKO_PD1, H3K36ac rep3
- GSM8831344 Liver tumor, MKO_PD1, Input rep1
- GSM8831345 Liver tumor, MKO_PD1, Input rep2
- GSM8831346 Liver tumor, MKO_PD1, Input rep3
- GSM9370327 BMDM, without AC treatment, rep1
- GSM9370328 BMDM, without AC treatment, rep2
- GSM9370329 BMDM, without AC treatment, rep3
- GSM9370330 BMDM, with AC treatment, rep1
- GSM9370331 BMDM, with AC treatment, rep2
- GSM9370332 BMDM, with AC treatment, rep3
- GSM9370345 Liver tumor, TREM2_pos_TAM, rep1
- GSM9370346 Liver tumor, TREM2_pos_TAM, rep2
- GSM9370347 Liver tumor, TREM2_pos_TAM, rep3
- GSM9370348 Liver tumor, TREM2_neg_TAM, rep1
- GSM9370349 Liver tumor, TREM2_neg_TAM, rep2
- GSM9370350 Liver tumor, TREM2_neg_TAM, rep3
- GSE291274 The placentalia specific histone H3.4 promotes germ cell development and reproductive fitness 167 samples
- GSE236580 Adipose tissue retains an epigenetic memory of obesity after weight loss 135 samples
- GSE274969 Genetic variation in the activity of a TREM2-p53 signaling axis determines oxygeninduced lung injury 77 samples
- GSE333807 Single-nucleus multiomic profiling of hippocampus and frontal cortex in a C9orf72 knockout mouse model 52 samples
- GSE266584 Epigenetic and transcriptional regulation of dendritic cell development and anti-tumor function by HDAC1 34 samples
- GSE217664 Decoding Trp53 regulatory program in various tissues and organs 404 samples
- GSE296994 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation 174 samples
- GSE312302 NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq 171 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.