GEO series
ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment.
GSE297837
Mus musculus
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
126 samples
Submitted 2026/05/01
Platform GPL24247
SuperSeries — this record groups several sub-series.
Summary
This SuperSeries is composed of the SubSeries listed below.
Published in
Schnabl-Baumgartner J, Mohn F, Schwaiger M et al.
· Molecular cell 2026
· PMID 42413492
· doi:10.1016/j.molcel.2026.06.024
This dataset
Download
Direct links to NCBI, no account and no request form: the whole study as GSE297837_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 126 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1266251 and SRA study SRP587035. Searching any of these in the dataset finder brings you back here.
Study design
13 conditions, mostly in triplicate
RNA-seq in ADNP-FKBP12 mESC, ctrl, 1h, ×3
RNA-seq in ADNP-FKBP12 mESC, ctrl, 24h, ×3
RNA-seq in ADNP-FKBP12 mESC, ctrl, 4h, ×3
RNA-seq in ADNP-FKBP12 mESC, dTAG13, 24h, ×3
RNA-seq in ADNP-FKBP12 mESC, dTAG13, 4h, ×3
RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, ctrl… ×3
RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, dTAG… ×3
RNA-seq in CTCF-FKBP12 mESC, ctrl, 24h, ×3
+7 more
Supports a between-group comparison across 38 samples.
13 replicated groups read from the first 40 of 126 sample titles; they account for 38 of them. Check it against the sample list below before relying on it.
Samples in this study
0 selected
- GSM9000627 RNA-seq in ADNP-FKBP12 mESC, ctrl, 1h, replicate 1
- GSM9000628 RNA-seq in ADNP-FKBP12 mESC, ctrl, 1h, replicate 2
- GSM9000629 RNA-seq in ADNP-FKBP12 mESC, ctrl, 1h, replicate 3
- GSM9000630 RNA-seq in ADNP-FKBP12 mESC, ctrl, 24h, replicate 1
- GSM9000631 RNA-seq in ADNP-FKBP12 mESC, ctrl, 24h, replicate 2
- GSM9000632 RNA-seq in ADNP-FKBP12 mESC, ctrl, 24h, replicate 3
- GSM9000633 RNA-seq in ADNP-FKBP12 mESC, ctrl, 4h, replicate 1
- GSM9000634 RNA-seq in ADNP-FKBP12 mESC, ctrl, 4h, replicate 2
- GSM9000635 RNA-seq in ADNP-FKBP12 mESC, ctrl, 4h, replicate 3
- GSM9000636 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 1h, replicate 1
- GSM9000637 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 1h, replicate 2
- GSM9000638 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 1h, replicate 3
- GSM9000639 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 24h, replicate 1
- GSM9000640 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 24h, replicate 2
- GSM9000641 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 24h, replicate 3
- GSM9000642 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 4h, replicate 1
- GSM9000643 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 4h, replicate 2
- GSM9000644 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 4h, replicate 3
- GSM9000645 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, ctrl, 24h, replicate 1
- GSM9000646 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, ctrl, 24h, replicate 2
- GSM9000647 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, ctrl, 24h, replicate 3
- GSM9000648 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, dTAG13, 24h, replicate 1
- GSM9000649 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, dTAG13, 24h, replicate 2
- GSM9000650 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, dTAG13, 24h, replicate 3
- GSM9000651 RNA-seq in CTCF-FKBP12 mESC, ctrl, 24h, replicate 1
- GSM9000652 RNA-seq in CTCF-FKBP12 mESC, ctrl, 24h, replicate 2
- GSM9000653 RNA-seq in CTCF-FKBP12 mESC, ctrl, 24h, replicate 3
- GSM9000654 RNA-seq in CTCF-FKBP12 mESC, dTAG13, 24h, replicate 1
- GSM9000655 RNA-seq in CTCF-FKBP12 mESC, dTAG13, 24h, replicate 2
- GSM9000656 RNA-seq in CTCF-FKBP12 mESC, dTAG13, 24h, replicate 3
- GSM9000657 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 24h, replicate 1
- GSM9000658 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 24h, replicate 2
- GSM9000659 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 24h, replicate 3
- GSM9000660 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 24h, replicate 1
- GSM9000661 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 24h, replicate 2
- GSM9000662 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 24h, replicate 3
- GSM9000663 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 4h, replicate 1
- GSM9000664 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 4h, replicate 2
- GSM9000665 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 4h, replicate 3
- GSM9000666 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 4h, replicate 1
+ 86 more — browse all 126 samples with per-sample file links →
Similar datasets
- GSE217664 Decoding Trp53 regulatory program in various tissues and organs 404 samples
- GSE296994 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation 174 samples
- GSE312302 NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq 171 samples
- GSE291274 The placentalia specific histone H3.4 promotes germ cell development and reproductive fitness 167 samples
- GSE318069 eIF4G2-mediated Translation Initiation of Histone Modifiers is Essential for Intestinal Stem Cell Maintenance and Differentiation 145 samples
- GSE236580 Adipose tissue retains an epigenetic memory of obesity after weight loss 135 samples
- GSE294389 BMAL1 and YAP cooperate to hijack enhancers and promote inflammation in the aged epidermis 131 samples
- GSE248866 The outcomes of caloric restriction are driven by enhanced glucocorticoid rhythms. 114 samples
Share this dataset
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.