GEO series
Late-stage tertiary lymphoid structures in hepatocellular carcinoma treated with neoadjuvant immune checkpoint blockade
GSE272348
Homo sapiens
Expression profiling by high throughput sequencing; Other
31 samples
Submitted 2024/09/13
Platform GPL24676
SuperSeries — this record groups several sub-series.
Summary
This SuperSeries is composed of the SubSeries listed below.
Published in
Shu DH, Ho WJ, Kagohara LT et al.
· Nature immunology 2024
· PMID 39455893
· doi:10.1038/s41590-024-01992-w
This dataset
Download
Direct links to NCBI, no account and no request form: the whole study as GSE272348_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 31 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1136490. Searching any of these in the dataset finder brings you back here.
Study design
31 conditions, each sampled once — no replicated groups
Read from 31 sample titles: 31 distinct titles with little repetition. Check it against the sample list below before relying on it.
Samples in this study
0 selected
- GSM8398966 P01, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398967 P02, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398968 P03, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398969 P07, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398970 P08, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398971 P11, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398972 P12, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398973 P13, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398974 P14, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398975 OT1, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398976 OT2, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398977 OT4, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398978 OT5, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398979 OT6, tumor, bulkRNAseq and reconstructed TCR/BCR repertoires
- GSM8398980 All samples, peripheral blood (n=7) and tumor (n=1), aggregated scRNA-seq
- GSM8398981 P02, peripheral blood, scBCR-seq
- GSM8398982 P02, peripheral blood, scTCR-seq
- GSM8398983 P03, peripheral blood, scBCR-seq
- GSM8398984 P03, peripheral blood, scTCR-seq
- GSM8398985 P07, peripheral blood, scBCR-seq
- GSM8398986 P07, peripheral blood, scTCR-seq
- GSM8398987 P08, peripheral blood, scBCR-seq
- GSM8398988 P08, peripheral blood, scTCR-seq
- GSM8398989 P12, peripheral blood, scBCR-seq
- GSM8398990 P12, peripheral blood, scTCR-seq
- GSM8398991 OT1, peripheral blood, scBCR-seq
- GSM8398992 OT1, peripheral blood, scTCR-seq
- GSM8398993 OT6, peripheral blood, scBCR-seq
- GSM8398994 OT6, peripheral blood, scTCR-seq
- GSM8398995 OT6, TIL, scBCR-seq
- GSM8398996 OT6, TIL, scTCR-seq
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