Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics
Direct links to NCBI, no account and no request form: the whole study as GSE189184_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 16 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA781903 and SRA study SRP346915. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 11 samples.
3 replicated groups read from 16 sample titles; they account for 11 of them. Check it against the sample list below before relying on it.
- GSM5695828 GI Biobank Corona Recovery 17 (GI 6266)
- GSM5695829 GI Biobank Corona Recovery 15 (GI 6264)
- GSM5695830 PRISE 31
- GSM5695831 PRISE 14
- GSM5695832 GI 6275
- GSM5695833 PRISE 23
- GSM5695834 GI 6967_B8
- GSM5695835 GI 6967_B9
- GSM5695836 GI 6278
- GSM5695837 GI 6925
- GSM5695838 GI 6658
- GSM5695839 GI 4980
- GSM5695840 BB4652
- GSM5695841 GI 6274
- GSM5695842 GI 3667 (#1)
- GSM5695843 TIP 517
- GSE228360 Spatial and single cell transcriptomics reveals cellular crosstalk changes in ileal Crohn’s disease during inflammation 24 samples
- GSE285659 Innate immune pathways drive early inflammation in the intravascular space in stroke patients with large vessel occlusion 12 samples
- GSE296419 The critical role of the host endogenous immune compartment after intracerebroventricular CAR T cell therapy in recurrent GBM 143 samples
- GSE235715 Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation 60 samples
- GSE272348 Late-stage tertiary lymphoid structures in hepatocellular carcinoma treated with neoadjuvant immune checkpoint blockade 31 samples
- GSE338460 Immune hallmarks of recurrent immune checkpoint inhibitor-mediated inflammatory arthritis 25 samples
- GSE253723 Reverse translational discovery reveals dysregulation of CD4+ and CD8+ resident memory T, myeloid, and stromal cells in steroid-refractory, checkpoint inhibitor colitis 12 samples
- GSE269379 The CXCL16/CXCR6 axis is linked to immune effector cell-associated neurotoxicity in chimeric antigen receptor (CAR) T cell therapy 10 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.