High throughput sequencing of B and T cells in checkpoint inhibitor treated patients
Direct links to NCBI, no account and no request form: the whole study as GSE313597_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 27 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1380378 and SRA study SRP654804. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 27 samples.
9 replicated groups read from 27 sample titles; they account for 27 of them. Check it against the sample list below before relying on it.
- GSM9370857 GEX pool 1 channel 1
- GSM9370858 GEX pool 1 channel 2
- GSM9370859 GEX pool 1 channel 3
- GSM9370860 GEX pool 2 channel 1
- GSM9370861 GEX pool 2 channel 2
- GSM9370862 GEX pool 2 channel 3
- GSM9370863 GEX pool 3 channel 1
- GSM9370864 GEX pool 3 channel 2
- GSM9370865 GEX pool 3 channel 3
- GSM9370866 TCR pool 1 channel 1
- GSM9370867 TCR pool 1 channel 2
- GSM9370868 TCR pool 1 channel 3
- GSM9370869 TCR pool 2 channel 1
- GSM9370870 TCR pool 2 channel 2
- GSM9370871 TCR pool 2 channel 3
- GSM9370872 TCR pool 3 channel 1
- GSM9370873 TCR pool 3 channel 2
- GSM9370874 TCR pool 3 channel 3
- GSM9370875 FB pool 1 channel 1
- GSM9370876 FB pool 1 channel 2
- GSM9370877 FB pool 1 channel 3
- GSM9370878 FB pool 2 channel 1
- GSM9370879 FB pool 2 channel 2
- GSM9370880 FB pool 2 channel 3
- GSM9370881 FB pool 3 channel 1
- GSM9370882 FB pool 3 channel 2
- GSM9370883 FB pool 3 channel 3
- GSE335494 B-cell depletion improves therapeutic index of combination checkpoint blockade in patients with advanced melanoma 44 samples
- GSE272348 Late-stage tertiary lymphoid structures in hepatocellular carcinoma treated with neoadjuvant immune checkpoint blockade 31 samples
- GSE338460 Immune hallmarks of recurrent immune checkpoint inhibitor-mediated inflammatory arthritis 25 samples
- GSE253723 Reverse translational discovery reveals dysregulation of CD4+ and CD8+ resident memory T, myeloid, and stromal cells in steroid-refractory, checkpoint inhibitor colitis 12 samples
- GSE318420 Immunosuppressive monocytes are enriched in hepatocellular carcinoma patients with liver dysfunction in a phase II trial of combination sorafenib and nivolumab 210 samples
- GSE279392 Single-cell RNA and TCR sequencing from skin, blood and cerebral spinal fluid (CSF) samples from Degos disease patients 116 samples
- GSE324062 RAS pathway activation drives clonal selection and monocytic differentiation in FLT3 and BCL2 inhibitor resistance 61 samples
- GSE293012 Single cell RNA sequencing of bone marrow cells in patients post allogenic stem cell transplantation 33 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.