Childhood cancer mutagenesis caused by a domesticated DNA transposase
Direct links to NCBI, no account and no request form: the whole study as GSE249785_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 12 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1050329 and SRA study SRP476778. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
4 replicated groups read from 12 sample titles; they account for 12 of them. Check it against the sample list below before relying on it.
- GSM7964206 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5-/-, RNA, rep 1
- GSM7964207 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5-/-, RNA, rep 2
- GSM7964208 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5+/+, RNA, rep 1
- GSM7964209 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5+/+, RNA, rep 2
- GSM7964210 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5-/-, RNA, rep 3
- GSM7964211 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5+/+, RNA, rep 3
- GSM7964212 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5-/-, ATAC, rep 1
- GSM7964213 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5-/-, ATAC, rep 2
- GSM7964214 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5+/+, ATAC, rep 1
- GSM7964215 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5+/+, ATAC, rep 2
- GSM7964216 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5-/-, ATAC, rep 3
- GSM7964217 Medulloblastoma, Ptf1a-Cre/+; Ptch1fl/fl; Pgbd5+/+, ATAC, rep 3
- GSE214191 Oxidative Stress Converts Benign Lesions to Cancer via a Self-Amplifying NRF2-EZH2 Loop 63 samples
- GSE290756 Lineage Plasticity Driven by GATA6 Loss Fuels Colorectal Cancer Metastasis 50 samples
- GSE255278 Mediator Subunit MED4 Enforces Metastatic Dormancy in Breast Cancer 27 samples
- GSE217664 Decoding Trp53 regulatory program in various tissues and organs 404 samples
- GSE296994 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation 174 samples
- GSE312302 NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq 171 samples
- GSE291274 The placentalia specific histone H3.4 promotes germ cell development and reproductive fitness 167 samples
- GSE318069 eIF4G2-mediated Translation Initiation of Histone Modifiers is Essential for Intestinal Stem Cell Maintenance and Differentiation 145 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.