SEAMoD: A fully interpretable neural network for cis-regulatory analysis of differentially expressed genes
Direct links to NCBI, no account and no request form: the whole study as GSE236450_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 24 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA990819 and SRA study SRP447200. Searching any of these in the dataset finder brings you back here.
Read from 24 sample titles: 24 distinct titles with little repetition. Check it against the sample list below before relying on it.
- GSM7547609 NSC_DIV0_1_RNA
- GSM7547611 NSC_DIV0_2_RNA
- GSM7547612 NSC_DIV0_3_RNA
- GSM7547613 NSC-AST_DIV4_1_RNA
- GSM7547614 NSC-AST_DIV4_2_RNA
- GSM7547615 NSC-AST_DIV4_3_RNA
- GSM7547616 NSC-NEU_DIV4_1_RNA
- GSM7547618 NSC-NEU_DIV4_2_RNA
- GSM7547619 NSC-NEU_DIV4_3_RNA
- GSM7547620 NSC-OLG_DIV4_1_RNA
- GSM7547621 NSC-OLG_DIV4_2_RNA
- GSM7547698 318_NSC_DIV0_H3k27ac
- GSM7547699 319_NSC_DIV0_H3k27ac
- GSM7547700 320_NSC_DIV0_input
- GSM7547702 336_NSC-NEU_DIV4_H3k27ac
- GSM7547703 337_NSC-NEU_DIV4_H3k27ac
- GSM7547704 338_NSC-NEU_DIV4_input
- GSM7547705 494_NSC-AST_DIV4_H3k27ac
- GSM7547706 495_NSC-AST_DIV4_H3k27ac
- GSM7547707 497_NSC-OLG_DIV4_H3k27ac
- GSM7547709 498_NSC-OLG_DIV4_H3k27ac
- GSM7547710 499_NSC-OLG_DIV4_input
- GSM7547711 625_NSC-AST_DIV4_input
- GSM7547712 626_NSC-AST_DIV4_input
- GSE217664 Decoding Trp53 regulatory program in various tissues and organs 404 samples
- GSE254090 A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders 87 samples
- GSE267884 Foxp3 and BATF cooperatively direct cis-regulatory programs and gene expression for effector Treg cell differentiation [scMultiome] 16 samples
- GSE296994 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation 174 samples
- GSE312302 NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq 171 samples
- GSE291274 The placentalia specific histone H3.4 promotes germ cell development and reproductive fitness 167 samples
- GSE318069 eIF4G2-mediated Translation Initiation of Histone Modifiers is Essential for Intestinal Stem Cell Maintenance and Differentiation 145 samples
- GSE236580 Adipose tissue retains an epigenetic memory of obesity after weight loss 135 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.