A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders
Direct links to NCBI, no account and no request form: the whole study as GSE254090_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 87 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1068528 and SRA study SRP485683. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 21 samples.
10 replicated groups read from the first 40 of 87 sample titles; they account for 21 of them. Check it against the sample list below before relying on it.
- GSM8033144 CN3_e11.5
- GSM8033145 CN3_e10.5
- GSM8033146 CN7_e10.5_R1
- GSM8033147 CN7_e10.5_R2
- GSM8033148 CN7_e11.5_R1
- GSM8033149 CN7_e11.5_R2
- GSM8033150 CN7neg_e11.5_R1
- GSM8033151 CN7neg_e11.5_R2
- GSM8033152 SMN_e10.5_R1
- GSM8033153 SMN_e10.5_R2
- GSM8033154 SMN_e11.5_R1
- GSM8033155 SMN_e11.5_R2
- GSM8033156 bulkRNA_cMN3_Isl1-pos_E10-5A
- GSM8033157 bulkRNA_cMN3_Isl1-pos_E10-5B
- GSM8033158 bulkRNA_cMN3_Isl1-pos_E11-5A
- GSM8033159 bulkRNA_cMN3_Isl1-pos_E11-5B
- GSM8033160 bulkRNA_cMN4_Isl1-pos_E10-5A
- GSM8033161 bulkRNA_cMN4_Isl1-pos_E10-5B
- GSM8033162 bulkRNA_cMN4_Isl1-pos_E11-5A
- GSM8033163 bulkRNA_cMN4_Isl1-pos_E11-5B
- GSM8033164 bulkRNA_cMN6_Hb9-pos_E11-5A1
- GSM8033165 bulkRNA_cMN6_Hb9-pos_E11-5A2
- GSM8033166 bulkRNA_cMN6_Hb9-pos_E11-5B
- GSM8033167 bulkRNA_cMN7_Isl1-pos_E10-5A
- GSM8033168 bulkRNA_cMN7_Isl1-pos_E10-5B
- GSM8033169 bulkRNA_cMN7_Isl1-pos_E11-5A
- GSM8033170 bulkRNA_cMN7_Isl1-pos_E11-5B
- GSM8033171 CN347SMN_e11.5_R1_ATAC
- GSM8033172 CN347SMN_e11.5_R1_GEX
- GSM8033173 CN347SMN_e11.5_R2_ATAC
- GSM8033174 CN347SMN_e11.5_R2_GEX
- GSM8033175 CN34_e10.5_R1
- GSM8033176 CN34_e10.5_R2
- GSM8033177 CN34_e11.5_R1
- GSM8033178 CN34_e11.5_R2
- GSM8033179 CN6_e10.5_R1
- GSM8033180 CN6_e10.5_R2
- GSM8033181 CN6_e11.5_R1
- GSM8033182 CN6_e11.5_R2
- GSM8033183 CN7_e10.5_R1
+ 47 more — browse all 87 samples with per-sample file links →
- GSE217664 Decoding Trp53 regulatory program in various tissues and organs 404 samples
- GSE314068 Mapping the ISR Landscape in Cognitive Disorders via single-cell multi-omics 28 samples
- GSE236450 SEAMoD: A fully interpretable neural network for cis-regulatory analysis of differentially expressed genes 24 samples
- GSE267884 Foxp3 and BATF cooperatively direct cis-regulatory programs and gene expression for effector Treg cell differentiation [scMultiome] 16 samples
- GSE296994 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation 174 samples
- GSE312302 NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq 171 samples
- GSE291274 The placentalia specific histone H3.4 promotes germ cell development and reproductive fitness 167 samples
- GSE318069 eIF4G2-mediated Translation Initiation of Histone Modifiers is Essential for Intestinal Stem Cell Maintenance and Differentiation 145 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.