Biomarker-guided responses in patient-derived organoids predict effective therapies in breast cancer
Direct links to NCBI, no account and no request form: the whole study as GSE303509_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 14 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1295546 and SRA study SRP603073. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 14 samples.
1 replicated groups read from 14 sample titles; they account for 14 of them. Check it against the sample list below before relying on it.
- GSM9128292 patient-derived organoids, sample TORG39
- GSM9128293 patient-derived organoids, sample TORG40
- GSM9128294 patient-derived organoids, sample TORG43
- GSM9128295 patient-derived organoids, sample TORG45
- GSM9128299 patient-derived organoids, sample TORG51
- GSM9128300 patient-derived organoids, sample TORG53
- GSM9128301 patient-derived organoids, sample TORG56
- GSM9128303 patient-derived organoids, sample TORG58
- GSM9128304 patient-derived organoids, sample TORG61
- GSM9128305 patient-derived organoids, sample TORG64
- GSM9128307 patient-derived organoids, sample TORG139
- GSM9128308 patient-derived organoids, sample TORG146
- GSM9785373 patient-derived organoids, sample TORG155
- GSM9785374 patient-derived organoids, sample TORG565
- GSE303346 Single-Cell RNA-Seq Reveals Immunosuppressive Effects of Triple-Negative Breast Cancer–Derived Exosomes on NK Cell Responses 16 samples
- GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples
- GSE323973 Expression profiling by high throughput sequencing of breast cancer 158 samples
- GSE337246 Integrated single-cell profiling of RNA and DNA interactomes reveals targetable chromatin architectures in cancer [scRNA-Seq organoids] 35 samples
- GSE267718 Single cell RNA sequencing (scRNAseq) of urine-derived cells, peripheral blood mononuclear (PBMC), and tumor cells from bladder cancer patients. 33 samples
- GSE328275 Single-cell RNA sequencing of CD45+ immune cells across primary tumor, sentinel tumor-draining lymph node, and axillary lymph node in treatment-naive triple-negative breast cancer 28 samples
- GSE342455 Transcriptomic profiling of tumor-associated macrophages following pharmacological SYK inhibition in a human breast cancer co-culture model 6 samples
- GSE243013 A single-cell atlas of immune heterogeneity in anti-PD1-treated non-small cell lung cancer 243 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.