GEO series
Single cell RNA sequencing (scRNAseq) of urine-derived cells, peripheral blood mononuclear (PBMC), and tumor cells from bladder cancer patients.
GSE267718
Homo sapiens
Expression profiling by high throughput sequencing
33 samples
Submitted 2024/05/17
Platform GPL24676
Summary
As no one previously examined urine-derived cells from bladder cancer patients, we performed scRNAseq to profile the diversity of these cells and their transcriptional profiles. We used scRNAseq to compare the profiles of urine-derived cells to matched tumor cells and PBMC from bladder cancer patients.
Published in
Tran MA, Youssef D, Shroff S et al.
· The Journal of experimental medicine 2024
· PMID 38847806
· doi:10.1084/jem.20240045
This dataset
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Direct links to NCBI, no account and no request form: the whole study as GSE267718_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 33 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1112449 and SRA study SRP508226. Searching any of these in the dataset finder brings you back here.
Study design
33 conditions, each sampled once — no replicated groups
Read from 33 sample titles: 33 distinct titles with little repetition. Check it against the sample list below before relying on it.
Samples in this study
0 selected
- GSM8273653 Patient 1 Urine 3' scRNAseq
- GSM8273654 Patient 2 Urine 3' scRNAseq
- GSM8273655 Patient 2 Tumor 3' scRNAseq
- GSM8273656 Patient 3 Urine 3' scRNAseq
- GSM8273657 Patient 3 Tumor 3' scRNAseq
- GSM8273658 Patient 4 Urine 5' scRNAseq
- GSM8273659 Patient 4 Tumor 5' scRNAseq
- GSM8273660 Patient 5 Urine 3' scRNAseq
- GSM8273661 Patient 5 Tumor 3' scRNAseq
- GSM8273662 Patient 5 PBMC 3' scRNAseq
- GSM8273663 Patient 6 Urine 5' scRNAseq
- GSM8273664 Patient 6 PBMC 5' scRNAseq
- GSM8273665 Patient 6 Tumor 5' scRNAseq
- GSM8273666 Patient 7A Urine 3' scRNAseq
- GSM8273667 Patient 7A PBMC 3' scRNAseq
- GSM8273668 Patient 7A Tumor 3' scRNAseq
- GSM8273669 Patient 7B Urine 3' scRNAseq
- GSM8273670 Patient 7B Tumor 3' scRNAseq
- GSM8273671 Patient 8 Urine 3' scRNAseq
- GSM8273672 Patient 8 Tumor 3' scRNAseq
- GSM8273673 Patient 8 PBMC 3' scRNAseq
- GSM8273674 Patient 9 Urine 3' scRNAseq
- GSM8273675 Patient 9 Tumor 3' scRNAseq
- GSM8273676 Patient 9 PBMC 3' scRNAseq
- GSM8273677 BCG Week 1 Pre BCG 3' scRNAseq
- GSM8273678 BCG Week 1 Post BCG 3' scRNAseq
- GSM8273679 BCG Week 3 Pre BCG 3' scRNAseq
- GSM8273680 BCG Week 3 Post BCG 3' scRNAseq
- GSM8273681 BCG Week 4 Post BCG 3' scRNAseq
- GSM8273682 BCG Week 5 Pre BCG 3' scRNAseq
- GSM8273683 BCG Week 5 Post BCG 3' scRNAseq
- GSM8273684 BCG Week 6 Pre BCG 3' scRNAseq
- GSM8273685 BCG Week 6 Post BCG 3' scRNAseq
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