Profiling the RNA-Binding Proteome of KSHV-Infected Cells Uncovers a Viral Strategy for Hijacking Host Signaling via RNA-Dependent Interactions.

Direct links to NCBI, no account and no request form: the whole study as GSE308077_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 18 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1328701 and SRA study SRP620475. Searching any of these in the dataset finder brings you back here.

Supports a between-group comparison across 18 samples.

6 replicated groups read from 18 sample titles; they account for 18 of them. Check it against the sample list below before relying on it.

• GSM9237549 BJAB-BAC16 WT latent 1
• GSM9237550 BJAB-BAC16 WT latent 2
• GSM9237551 BJAB-BAC16 WT latent 3
• GSM9237552 BJAB-BAC16 REV latent 1
• GSM9237553 BJAB-BAC16 REV latent 2
• GSM9237554 BJAB-BAC16 REV latent 3
• GSM9237555 BJAB-BAC16 AAA latent 1
• GSM9237556 BJAB-BAC16 AAA latent 2
• GSM9237557 BJAB-BAC16 AAA latent 3
• GSM9237558 BJAB-BAC16 WT lytic 1
• GSM9237559 BJAB-BAC16 WT lytic 2
• GSM9237560 BJAB-BAC16 WT lytic 3
• GSM9237561 BJAB-BAC16 REV lytic 1
• GSM9237562 BJAB-BAC16 REV lytic 2
• GSM9237563 BJAB-BAC16 REV lytic 3
• GSM9237564 BJAB-BAC16 AAA lytic 1
• GSM9237565 BJAB-BAC16 AAA lytic 2
• GSM9237566 BJAB-BAC16 AAA lytic 3

• GSE273700 Whole transcriptome analysis reveals T cell signaling activation in septic patients with thrombocytopenia 104 samples
• GSE220774 Side- and disease-dependent changes in human aortic valve cell population and transcriptomic heterogeneity determined by single-cell RNA sequencing 15 samples
• GSE314342 Genome-scale perturb-seq in primary human CD4+ T cells reveals genes regulating T cell programs and human immune traits. 577 samples
• GSE205672 Transcriptomes of human PBMCs and monocytes in sepsis patients 460 samples
• GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples
• GSE309595 Longitudinal Analysis of Multiple Myeloma: Therapeutic Response and Immune Microenvironment Dynamics in the Context of Tumor Heterogeneity [scRNA-seq] 270 samples
• GSE243013 A single-cell atlas of immune heterogeneity in anti-PD1-treated non-small cell lung cancer 243 samples
• GSE263733 Single-cell transcriptome analysis reveals subtype-specific clonal evolution and microenvironmental changes in liver metastasis of pancreatic adenocarcinoma and their clinical implications 218 samples

Search all human RNA-seq datasets in GEO →