GEO series
Trimodal single-cell profiling of transcriptome, epigenome and 3D genome in complex tissues with scHiCAR
GSE305889
Homo sapiens; Mus musculus
Other; Expression profiling by high throughput sequencing
177 samples
Submitted 2025/08/30
Platform GPL28457Platform GPL31277
SuperSeries — this record groups several sub-series.
Summary
This SuperSeries is composed of the SubSeries listed below.
Published in
Wei X, Xu Y, Yang D et al.
· Nature biotechnology 2026
· PMID 41714417
· doi:10.1038/s41587-026-03013-7
This dataset
Download
Direct links to NCBI, no account and no request form: the whole study as GSE305889_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 177 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1308126 and SRA study SRP506778. Searching any of these in the dataset finder brings you back here.
Study design
32 × human H1, GM12878 and mouse ESC, DNA, batch1, vs 5 × mouse Pvalb neuron, vs 2 × human H1, GM12878 and mouse ESC, RNA, batch2,
Supports a between-group comparison across 39 samples.
3 replicated groups read from the first 40 of 177 sample titles; they account for 39 of them. Check it against the sample list below before relying on it.
Samples in this study
0 selected
- GSM8260157 human H1, GM12878 and mouse ESC, DNA, batch1, rep1
- GSM8260158 human H1, GM12878 and mouse ESC, DNA, batch1, rep2
- GSM8260159 human H1, GM12878 and mouse ESC, DNA, batch1, rep3
- GSM8260160 human H1, GM12878 and mouse ESC, DNA, batch1, rep4
- GSM8260161 human H1, GM12878 and mouse ESC, DNA, batch1, rep5
- GSM8260162 human H1, GM12878 and mouse ESC, DNA, batch1, rep6
- GSM8260163 human H1, GM12878 and mouse ESC, DNA, batch1, rep7
- GSM8260164 human H1, GM12878 and mouse ESC, DNA, batch1, rep8
- GSM8260165 human H1, GM12878 and mouse ESC, DNA, batch1, rep9
- GSM8260166 human H1, GM12878 and mouse ESC, DNA, batch1, rep10
- GSM8260167 human H1, GM12878 and mouse ESC, DNA, batch1, rep11
- GSM8260168 human H1, GM12878 and mouse ESC, DNA, batch1, rep12
- GSM8260169 human H1, GM12878 and mouse ESC, DNA, batch1, rep13
- GSM8260170 human H1, GM12878 and mouse ESC, DNA, batch1, rep14
- GSM8260171 human H1, GM12878 and mouse ESC, DNA, batch1, rep15
- GSM8260172 human H1, GM12878 and mouse ESC, DNA, batch1, rep16
- GSM8260173 human H1, GM12878 and mouse ESC, DNA, batch1, rep17
- GSM8260174 human H1, GM12878 and mouse ESC, DNA, batch1, rep18
- GSM8260175 human H1, GM12878 and mouse ESC, DNA, batch1, rep19
- GSM8260176 human H1, GM12878 and mouse ESC, DNA, batch1, rep20
- GSM8260177 human H1, GM12878 and mouse ESC, DNA, batch1, rep21
- GSM8260178 human H1, GM12878 and mouse ESC, DNA, batch1, rep22
- GSM8260179 human H1, GM12878 and mouse ESC, DNA, batch1, rep23
- GSM8260180 human H1, GM12878 and mouse ESC, DNA, batch1, rep24
- GSM8260181 human H1, GM12878 and mouse ESC, DNA, batch1, rep25
- GSM8260182 human H1, GM12878 and mouse ESC, DNA, batch1, rep26
- GSM8260183 human H1, GM12878 and mouse ESC, DNA, batch1, rep27
- GSM8260184 human H1, GM12878 and mouse ESC, DNA, batch1, rep28
- GSM8260185 human H1, GM12878 and mouse ESC, DNA, batch1, rep29
- GSM8260186 human H1, GM12878 and mouse ESC, DNA, batch1, rep30
- GSM8260187 human H1, GM12878 and mouse ESC, DNA, batch1, rep31
- GSM8260188 human H1, GM12878 and mouse ESC, DNA, batch1, rep32
- GSM8260189 human H1, GM12878 and mouse ESC, RNA, batch2, rep1
- GSM8260190 human H1, GM12878 and mouse ESC, RNA, batch2, rep2
- GSM8260191 mouse Pvalb neuron, rep1
- GSM8260192 mouse Pvalb neuron, rep2
- GSM8260193 mouse Pvalb neuron, rep3
- GSM8260194 mouse Pvalb neuron, rep4
- GSM8260195 mouse Pvalb neuron, rep5
- GSM8260196 mouse astrocytes, rep1-1
+ 137 more — browse all 177 samples with per-sample file links →
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