Multiplex generation and single cell analysis of structural variants in mammalian genomes
Direct links to NCBI, no account and no request form: the whole study as GSE282636_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 197 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1189508 and SRA study SRP547022. Searching any of these in the dataset finder brings you back here.
Read from the first 40 of 197 sample titles: 31 distinct titles with little repetition. Check it against the sample list below before relying on it.
- GSM8647676 parental_rep1
- GSM8647677 4ugCre_d3_rep1
- GSM8647678 1ugCre_d3_rep1
- GSM8647679 200ngCre_d3_rep1
- GSM8647680 4ugBxb1_d3_rep1
- GSM8647681 1ugBxb1_d3_rep1
- GSM8647682 200ngBxb1_d3_rep1
- GSM8647683 parental_rep2
- GSM8647684 4ugCre_d3_rep2
- GSM8647685 1ugCre_d3_rep2
- GSM8647686 200ngCre_d3_rep2
- GSM8647687 4ugBxb1_d3_rep2
- GSM8647688 1ugBxb1_d3_rep2
- GSM8647689 200ngBxb1_d3_rep2
- GSM8647690 parental_rep3
- GSM8647691 parental_rep4
- GSM8647692 CreERT2_Tamoxifen_d3_rep1
- GSM8647693 ERT2CreERT2_Tamoxifen_d3_rep1
- GSM8647694 Cre_NoTamoxifen_d3_rep1
- GSM8647695 CreERT2_NoTamoxifen_d3_rep1
- GSM8647696 ERT2CreERT2_NoTamoxifen_d3_rep1
- GSM8647697 CreERT2_Tamoxifen_d5_rep1
- GSM8647698 ERT2CreERT2_Tamoxifen_d5_rep1
- GSM8647699 Cre_NoTamoxifen_d5_rep1
- GSM8647700 CreERT2_NoTamoxifen_d5_rep1
- GSM8647701 ERT2CreERT2_NoTamoxifen_d5_rep1
- GSM8647702 CreERT2_Tamoxifen_d7_rep1
- GSM8647703 ERT2CreERT2_Tamoxifen_d7_rep1
- GSM8647704 Cre_NoTamoxifen_d7_rep1
- GSM8647705 CreERT2_NoTamoxifen_d7_rep1
- GSM8647706 ERT2CreERT2_NoTamoxifen_d7_rep1
- GSM8647707 Cre_Pifi48h-at24h_d3_rep1
- GSM8647708 Cre_NoPifi_d3_rep1
- GSM8647709 Cre_Pifi48h-at24h_d5_rep1
- GSM8647710 Cre_NoPifi_d5_rep1
- GSM8647711 Shuffle_clone_A1
- GSM8647712 Shuffle_clone_B1
- GSM8647713 Shuffle_clone_C1
- GSM8647714 Shuffle_clone_D1
- GSM8647715 Shuffle_clone_E1
+ 157 more — browse all 197 samples with per-sample file links →
- GSE305889 Trimodal single-cell profiling of transcriptome, epigenome and 3D genome in complex tissues with scHiCAR 177 samples
- GSE336954 Central amygdala single-nucleus atlas reveals chromatin and gene transcription dynamics in human alcohol use disorder 126 samples
- GSE267117 scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [cellline_scHiCAR] 34 samples
- GSE325427 Integrative single-nucleus multiomic, CUT&Tag, and bulk RNA-seq profiling of human and mouse prefrontal cortex reveals gene regulatory mechanisms of cortical development and Meis2 function 34 samples
- GSE262355 Programmable transcript-specific enrichment for single-cell sequencing enables profiling of rare cell states 23 samples
- GSE328575 Single cell gene expression profiling of renal cell carcinoma 21 samples
- GSE250116 Single cell multiomic profiling of heterogenous PROCR+ cells in mouse mammary gland 20 samples
- GSE236107 Single cell transcriptomic analysis of acute and early ART-treated HIV-1-infected CD4+T cells from a reservoir-marking humanized mouse model 14 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.