An in situ method for identification of transcriptome-wide protein-RNA interactions in cells
Direct links to NCBI, no account and no request form: the whole study as GSE240326_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 78 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1003311 and SRA study SRP473696. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 39 samples.
12 replicated groups read from the first 40 of 78 sample titles; they account for 39 of them. Check it against the sample list below before relying on it.
- GSM7679828 PFA_HEK293T_RBFOX2_STAMP_replicate1
- GSM7679829 PFA_HEK293T_RBFOX2_STAMP_replicate2
- GSM7679830 PFA_HEK293T_RBFOX2_STAMP_replicate3
- GSM7679831 PFA_HEK293T_TDP43_STAMP_replicate1
- GSM7679832 PFA_HEK293T_TDP43_STAMP_replicate2
- GSM7679833 PFA_HEK293T_TDP43_STAMP_replicate3
- GSM7679834 PFA_HEK293T_Enzyme_Only_replicate1
- GSM7679835 PFA_HEK293T_Enzyme_Only_replicate2
- GSM7679836 PFA_HEK293T_Enzyme_Only_replicate3
- GSM7679837 PFA_HEK293T_Buffer_Only_replicate1
- GSM7679838 PFA_HEK293T_Buffer_Only_replicate2
- GSM7679839 PFA_HEK293T_Buffer_Only_replicate3
- GSM7679840 MeOH_HEK293T_RBFOX2_replicate1
- GSM7679841 MeOH_HEK293T_RBFOX2_replicate2
- GSM7679842 MeOH_HEK293T_RBFOX2_replicate3
- GSM7679843 MeOH_HEK293T_TDP43_replicate1
- GSM7679844 MeOH_HEK293T_TDP43_replicate2
- GSM7679845 MeOH_HEK293T_TDP43_replicate3
- GSM7679846 MeOH_HEK293T_Enzyme_only_replicate1
- GSM7679847 MeOH_HEK293T_Enzyme_only_replicate2
- GSM7679848 MeOH_HEK293T_Enzyme_only_replicate3
- GSM7679849 MeOH_HEK293T_Buffer_only_replicate1
- GSM7679850 MeOH_HEK293T_Buffer_only_replicate2
- GSM7679851 MeOH_HEK293T_Buffer_only_replicate3
- GSM7679852 Mouse_Brain_RBFOX2_replicate1
- GSM7679853 Mouse_Brain_RBFOX2_replicate2
- GSM7679854 Mouse_Brain_RBFOX2_replicate3
- GSM7679855 Mouse_Brain_Enzyme_only_replicate1
- GSM7679856 Mouse_Brain_Enzyme_only_replicate2
- GSM7679857 Mouse_Brain_Enzyme_only_replicate3
- GSM7679858 Mouse_Brain_Buffer_only_replicate1
- GSM7679859 Mouse_Brain_Buffer_only_replicate2
- GSM7679860 Mouse_Brain_Buffer_only_replicate3
- GSM7679861 RBFOX2_STAMP_APO1_Nb_dilute_1to50
- GSM7679862 RBFOX2_STAMP_APO1_Nb_dilute_1to100
- GSM7679863 RBFOX2_STAMP_APO1_Nb_dilute_1to200
- GSM7679864 RBFOX2_STAMP_APO1_Nb_dilute_1to500
- GSM7679865 RBFOX2_STAMP_APO1_Nb_dilute_1to1000
- GSM7679866 RBFOX2_STAMP_APO1_Nb_dilute_1to2000
- GSM7696205 HEK293T_APO_STAMP
+ 38 more — browse all 78 samples with per-sample file links →
- GSE307351 Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions 890 samples
- GSE305889 Trimodal single-cell profiling of transcriptome, epigenome and 3D genome in complex tissues with scHiCAR 177 samples
- GSE283706 Af-CUT&Tag: A Sensitive and Antibody-Free Chromatin Profiling Method Using Genetically Encoded Tags and High-Affinity Binders Fused to Tn5 65 samples
- GSE241849 Absolute quantitative and base-resolution sequencing reveals comprehensive landscape of pseudouridine across the human transcriptome 54 samples
- GSE324329 A kidney-protective mechanism via cellular oxidative stress reduction induced by CD5L protein 38 samples
- GSE267117 scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [cellline_scHiCAR] 34 samples
- GSE254156 The receptor protein tyrosine phosphatase PTPRK promotes intestinal repair and catalysis-independent tumor suppression 25 samples
- GSE274495 The remodeling of bivalent chromatin is essential for mouse peri-implantation embryogenesis. 421 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.