Chromatin accessibility profiling of high endothelial cells (HECs) from mouse peripheral lymph node and Peyer's patch by ATAC-seq

Direct links to NCBI, no account and no request form: the whole study as GSE342565_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 2 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1508208 and SRA study SRP724507. Searching any of these in the dataset finder brings you back here.

Read from 2 sample titles: 2 distinct titles with little repetition. Check it against the sample list below before relying on it.

• GSM9932939 High endothelial cells from mouse peripheral lymph node, ATAC-seq
• GSM9932940 High endothelial cells from mouse Peyer's patch, ATAC-seq

• GSE294103 SIRT6 Overexpression Counteracts Chromatin Aging [ATAC-Seq_tg] 28 samples
• GSE246986 Ki67-mediated chromatin accessibility impedes B-cell antigen-receptor gene rearrangement 24 samples
• GSE283906 RXR-Mediated Remodeling of Transcriptional and Chromatin Landscapes in APP Mouse Brain: Insights from Integrated Single-Cell RNA and ATAC Profiling 10 samples
• GSE304211 H4K16ac contributes to chromatin compartment reorganization during mitotic and meiotic transitions [CUTnTAG] 128 samples
• GSE272524 Chromatin-dependent motif syntax defines differentiation trajectories [ChIP-seq] 76 samples
• GSE294085 SIRT6 Overexpression Counteracts Chromatin Aging [ChIP-Seq] 74 samples
• GSE279088 Molecular dynamics driving phenotypic divergence among KRAS mutants in pancreatic tumorigenesis [ATAC-Seq] 74 samples
• GSE264614 Emerging cooperativity between Oct4 and Sox2 governs the pluripotency network in mouse early embryos [ATAC-seq] 44 samples

Search all mouse ChIP / ATAC / CUT&Tag datasets in GEO →