Epigenetic reprogramming of stromal cell states underpins pathologic tissue niches in Crohn’s disease
Direct links to NCBI, no account and no request form: the whole study as GSE307670_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 148 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1322482 and SRA study SRP618443. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 6 samples read as cases, 8 as controls.
8 replicated groups read from the first 40 of 148 sample titles; they account for 36 of them. Check it against the sample list below before relying on it.
- GSM9225869 unstimulated 1
- GSM9225870 unstimulated 2
- GSM9225871 unstimulated 3
- GSM9225872 unstimulated 4
- GSM9225873 unstimulated 5
- GSM9225874 unstimulated 6
- GSM9225875 stimulated_Belinostat 1
- GSM9225876 stimulated_Belinostat 2
- GSM9225877 stimulated_Belinostat 3
- GSM9225878 stimulated_Belinostat 4
- GSM9225879 stimulated_Belinostat 5
- GSM9225880 stimulated_Belinostat 6
- GSM9225881 stimulated_DMSO 1
- GSM9225882 stimulated_DMSO 2
- GSM9225883 stimulated_DMSO 3
- GSM9225884 stimulated_DMSO 4
- GSM9225885 stimulated_DMSO 5
- GSM9225886 stimulated_DMSO 6
- GSM9225896 unstim_dmso 1
- GSM9225897 unstim_dmso 2
- GSM9225898 unstim_dmso 3
- GSM9225899 unstim_dmso 4
- GSM9225900 combo_dmso 13
- GSM9225901 combo_dmso 14
- GSM9225902 combo_dmso 15
- GSM9225903 combo_dmso 16
- GSM9225904 combo_belinostat 17
- GSM9225905 combo_belinostat 18
- GSM9225906 combo_belinostat 19
- GSM9225907 combo_belinostat 20
- GSM9225908 combo_gskj4_21
- GSM9225909 combo_gskj4_22
- GSM9225910 combo_gskj4_23
- GSM9225911 combo_gskj4_24
- GSM9225994 unstimulated 1.
- GSM9225995 unstimulated 2.
- GSM9225996 unstimulated 3.
- GSM9225997 unstimulated 4.
- GSM9225998 IL1B 1
- GSM9225999 IL1B 2
+ 108 more — browse all 148 samples with per-sample file links →
- GSE280714 The role of RUNX2 and BHLHE40 in pathologically relevant CD4-positive tissue-resident T-cells in Crohn's disease. (scMultiome) 12 samples
- GSE306993 Transcriptional and epigenetic targets of MEF2C in human microglia contribute to cellular functions related to autism risk and age-related disease. 76 samples
- GSE324208 Epigenetic reprogramming drives cellular and phenotypic plasticity in liposarcoma 42 samples
- GSE286182 Single Nuclear RNAseq and MultiOme of IPF and Control Lung Tissue 75 samples
- GSE294559 Single-cell multi-omics characterize colorectal tumors, adjacent healthy tissue and matched organoids identifying CRC-unique features 72 samples
- GSE262636 Histone Variant H2A.J is a Key Epigenetic Regulator in Human Trophoblast Development 58 samples
- GSE303855 Mechanistic and Epigenetic Partitioning of Lamina-Associated Chromatin Revealed by a Genome-Wide Imaging Screen 45 samples
- GSE281743 Epigenetic Subtypes of High-Grade T1 Bladder Cancer Reveal Intra-Tumor Heterogeneity and Distinct Interactions with Tumor Microenvironment 41 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.