Deciphering the cis-regulatory code of alternative splicing in human cell lines
Direct links to NCBI, no account and no request form: the whole study as GSE307247_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 11 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1314833 and SRA study SRP617140. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 10 samples.
5 replicated groups read from 11 sample titles; they account for 10 of them. Check it against the sample list below before relying on it.
- GSM9219919 HEK293 MPRA replicate 1
- GSM9219920 HEK293 MPRA replicate 2
- GSM9219921 HeLa MPRA replicate 1
- GSM9219922 HeLa MPRA replicate 2
- GSM9219923 HMC3 MPRA replicate 1
- GSM9219924 HMC3 MPRA replicate 2
- GSM9219925 K562 MPRA replicate 1
- GSM9219926 K562 MPRA replicate 2
- GSM9219927 MCF7 MPRA replicate 1
- GSM9219928 MCF7 MPRA replicate 2
- GSM9219929 ESL DNA-seq
- GSE327727 D-SPIN constructs regulatory network models from scRNA-seq revealing organizing principles of perturbation response 194 samples
- GSE325670 Promoter mutagenesis and a massively parallel reporter screen of the MAPT locus identifies cis-regulatory elements and genetic variation effects 140 samples
- GSE272993 Combination anti-PD-1 and anti-CTLA-4 therapy generates waves of clonal responses that include progenitor-exhausted CD8 T cells [dataset 1] 360 samples
- GSE318420 Immunosuppressive monocytes are enriched in hepatocellular carcinoma patients with liver dysfunction in a phase II trial of combination sorafenib and nivolumab 210 samples
- GSE281556 Lysosomal sequestration of PARP inhibitors drives heterogeneous accumulation in ovarian cancer to increase efficacy 204 samples
- GSE317605 A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer [CITE-Seq] 168 samples
- GSE270387 Single cell profiling of peripheral blood mononuclear cells in diverse men with prostate cancer reveals lethal disease-associated immune signatures 165 samples
- GSE319236 Spatially resolved maternal and fetal cell contributions to severe Preeclampsia 152 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.