Loss of METTL3 potentiates transposable element expression and drives inflammation-induced cell plasticity in the mammary epithelium
Direct links to NCBI, no account and no request form: the whole study as GSE281124_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 24 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1182333 and SRA study SRP542697. Searching any of these in the dataset finder brings you back here.
Read from 24 sample titles: 24 distinct titles with little repetition. Check it against the sample list below before relying on it.
- GSM8607490 MCF10A cells, sg control, rep1 (ATAC-seq)
- GSM8607491 MCF10A cells, sgMETTL3-2, rep1 (ATAC-seq)
- GSM8607492 MCF10A cells, sgMETTL3-4, rep1 (ATAC-seq)
- GSM8607493 MCF10A cells, sg control, rep2 (ATAC-seq)
- GSM8607494 MCF10A cells, sgMETTL3-2, rep2 (ATAC-seq)
- GSM8607495 MCF10A cells, sgMETTL3-4, rep2 (ATAC-seq)
- GSM8607496 MCF10A cells, sg control, rep1 (ChIP-seq)
- GSM8607497 MCF10A cells, sgMETTL3-2, rep1 (ChIP-seq)
- GSM8607498 MCF10A cells, sgMETTL3-4, rep1 (ChIP-seq)
- GSM8607499 MCF10A cells, sg control, rep2 (ChIP-seq)
- GSM8607500 MCF10A cells, sgMETTL3-2, rep2 (ChIP-seq)
- GSM8607501 MCF10A cells, sgMETTL3-4, rep2 (ChIP-seq)
- GSM8607502 MCF10A cells, sg control, rep1 (RNA-seq)
- GSM8607503 MCF10A cells, sg control, rep2 (RNA-seq)
- GSM8607504 MCF10A cells, sg control, rep3 (RNA-seq)
- GSM8607505 MCF10A cells, sgMETTL3-2, rep1 (RNA-seq)
- GSM8607506 MCF10A cells, sgMETTL3-2, rep2 (RNA-seq)
- GSM8607507 MCF10A cells, sgMETTL3-2, rep3 (RNA-seq)
- GSM8607508 MCF10A cells, sgMETTL3-4, rep1 (RNA-seq)
- GSM8607509 MCF10A cells, sgMETTL3-4, rep2 (RNA-seq)
- GSM8607510 MCF10A cells, sgMETTL3-4, rep3 (RNA-seq)
- GSM8607511 normal breast organoid, sgAAVS1 (scRNA-seq)
- GSM8607512 normal breast organoid, sgMETTL3-2 (scRNA-seq)
- GSM8607513 normal breast organoid, sgMETTL3-4 (scRNA-seq)
- GSE296250 Targeting p300/CBP abolishes HOXB13 loss-induced lipogenesis and tumor metastasis 43 samples
- GSE324208 Epigenetic reprogramming drives cellular and phenotypic plasticity in liposarcoma 42 samples
- GSE237810 Multi-omics analysis of FOXO3 pioneer factor activity reveals distinct networks in proliferating and DNA damage induced senescent cells 65 samples
- GSE300197 The cytoskeleton drives abnormal chromatin-lamina interactions in LMNA-deficient cardiomyocytes. 30 samples
- GSE324815 Intratumoral CD40 agonist sotigalimab in combination with pembrolizumab induces rapid activation of antigen presenting cells and drives anti-tumor responses in non-injected tumors in metastatic melanoma: Results of a phase 1/2 study 24 samples
- GSE263684 MBNL1 hijacks a structured single-stranded distal DNA element to sustain FLT3 expression in KMT2A-rearranged leukemias 19 samples
- GSE309697 Generation of a Comprehensive Epigenomic Atlas in Clear Cell Renal Cell Carcinoma Informs Kidney Cancer Progression and Heritability 265 samples
- GSE303478 Systematic investigation reveals extensive Epstein-Barr virus transcriptional regulation of the human genome 217 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.