Two unrelated distal genes activated by a shared enhancer benefit from localizing inside the same small topological domain
Direct links to NCBI, no account and no request form: the whole study as GSE274836_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 97 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1148149 and SRA study SRP526430. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 40 samples.
4 replicated groups read from the first 40 of 97 sample titles; they account for 40 of them. Check it against the sample list below before relying on it.
- GSM8458673 K562, 3xhCTCF-D_CRE_deleted, clone1, VP:CCND1
- GSM8458674 K562, 3xhCTCF-D, clone1, VP:CCND1
- GSM8458675 K562, 3xhCTCF-D_CRE_deleted, clone1, VP:Enhancer
- GSM8458676 K562, 3xhCTCF-D, clone1, VP:Enhancer
- GSM8458677 K562, 3xhCTCF-D_CRE_deleted, clone1, VP:MYEOV
- GSM8458678 K562, 3xhCTCF-D, clone1, VP:MYEOV
- GSM8458679 K562, 3xhCTCF-D_CRE_deleted, clone2, VP:CCND1
- GSM8458680 K562, 3xhCTCF-D, clone2, VP:CCND1
- GSM8458681 K562, 3xhCTCF-D_CRE_deleted, clone2, VP:Enhancer
- GSM8458682 K562, 3xhCTCF-D, clone2, VP:Enhancer
- GSM8458683 K562, 3xhCTCF-D_CRE_deleted, clone2, VP:MYEOV
- GSM8458684 K562, 3xhCTCF-D, clone2, VP:MYEOV
- GSM8458685 K562, 3xhCTCF-U_CRE_deleted, clone1, VP:CCND1
- GSM8458686 K562, 3xhCTCF-U, clone1, VP:CCND1
- GSM8458687 K562, 3xhCTCF-U_CRE_deleted, clone1, VP:Enhancer
- GSM8458688 K562, 3xhCTCF-U, clone1, VP:Enhancer
- GSM8458689 K562, 3xhCTCF-U_CRE_deleted, clone1, VP:MYEOV
- GSM8458690 K562, 3xhCTCF-U, clone1, VP:MYEOV
- GSM8458691 K562, 3xhCTCF-U_CRE_deleted, clone2, VP:CCND1
- GSM8458692 K562, 3xhCTCF-U, clone2, VP:CCND1
- GSM8458693 K562, 3xhCTCF-U_CRE_deleted, clone2, VP:Enhancer
- GSM8458694 K562, 3xhCTCF-U, clone2, VP:Enhancer
- GSM8458695 K562, 3xhCTCF-U_CRE_deleted, clone2, VP:MYEOV
- GSM8458696 K562, 3xhCTCF-U, clone2, VP:MYEOV
- GSM8458697 K562, CCND1-del, clone1, VP:MYEOV
- GSM8458698 K562, CCND1-del, clone1, VP:CTCF_2
- GSM8458699 K562, CCND1-del, clone1, VP:Enhancer
- GSM8458700 K562, CCND1-del, clone2, VP:CTCF_2
- GSM8458701 K562, CCND1-del, clone2, VP:Enhancer
- GSM8458702 K562, CCND1-del, clone2, VP:MYEOV
- GSM8458703 K562, CTCF2-del, clone1, VP:CCND1
- GSM8458704 K562, CTCF2-del, clone1, VP:CTCF_1
- GSM8458705 K562, CTCF2-del, clone1, VP:Enhancer
- GSM8458706 K562, CTCF2-del, clone1, VP:MYEOV
- GSM8458707 K562, CTCF2-del, clone2, VP:CCND1
- GSM8458708 K562, CTCF2-del, clone2, VP:Enhancer
- GSM8458709 K562, CTCF2-del, clone2, VP:MYEOV
- GSM8458710 K562, CTCF2-del, clone1, VP:CTCF_4
- GSM8458711 K562, Enhancer-del, clone1, VP:CCND1
- GSM8458712 K562, Enhancer-del, clone1, VP:CTCF_1
+ 57 more — browse all 97 samples with per-sample file links →
- GSE342939 Senescent activated naive B cells promote anti-citrullinated antigen T cell responses and the transition to clinical rheumatoid arthritis 78 samples
- GSE281576 Long-range enhancer-controlled genes are hyper-sensitive to regulatory factor perturbations 54 samples
- GSE309511 Independent cell type-specific expression and distal regulation of the 9p21 locus cell cycle regulators: p14ARF, p16INK4A, p15INK4A, and ANRIL [CRISPR and scRNA-seq] 32 samples
- GSE270126 Divergent medulloblastoma chromatin states disclose KDM2B as a selective dependency. 219 samples
- GSE300844 Deciphering the functional impact of Alzheimer’s Disease-associated variants in resting and proinflammatory immune cells 192 samples
- GSE310353 In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment 116 samples
- GSE307215 Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease 104 samples
- GSE308629 Pooled CRISPR screens identify genes and non-coding genomic regions that regulate red blood cell density 99 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.