Genetic dependencies associated with transcription factor activities in human cancer cell lines
Direct links to NCBI, no account and no request form: the whole study as GSE263748_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 23 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1099147 and SRA study SRP501169. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
6 replicated groups read from 23 sample titles; they account for 15 of them. Check it against the sample list below before relying on it.
- GSM8057898 SNU761, Unlabelled, VT107-experiment
- GSM8057899 SNU761, DMSO 4h, rep1
- GSM8057900 SNU761, DMSO 4h, rep2
- GSM8057901 SNU761, VT107 0.1uM 4h, rep1
- GSM8057902 SNU761, VT107 0.1uM 4h, rep2
- GSM8057903 SNU761, VT107 2.15uM 4h, rep1
- GSM8057904 SNU761, VT107 2.15uM 4h, rep2
- GSM8057905 SNU761, Unlabelled, Intetumumab-experiment
- GSM8057906 SNU761, IgG-Ctrl 4h, rep1
- GSM8057907 SNU761, IgG-Ctrl 4h, rep2
- GSM8057908 SNU761, IgG-Ctrl 4h, rep3
- GSM8057909 SNU761, Intetumumab-1.5ug/ml 4h, rep1
- GSM8057910 SNU761, Intetumumab-1.5ug/ml 4h, rep2
- GSM8057911 SNU761, Intetumumab-1.5ug/ml 4h, rep3
- GSM8057912 SNU761, Intetumumab-5ug/ml 4h, rep1
- GSM8057913 SNU761, Intetumumab-5ug/ml 4h, rep2
- GSM8057914 SNU761, Intetumumab-5ug/ml 4h, rep3
- GSM8197841 Transcriptome reads, day 5 [SNU_D5_GEX]
- GSM8197842 Transcriptome reads, day 10 [SNU_D10_GEX]
- GSM8197843 Guide reads, day 5 [SNU_D5_sgRNA]
- GSM8197844 Guide reads, day 10 [SNU_D10_sgRNA]
- GSM8197845 Hash labels, day 5 [SNU_D5_ST]
- GSM8197846 Hash labels, day 10 [SNU_D10_ST]
- GSE310353 In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment 116 samples
- GSE274188 RAPIDASH: Tag-free enrichment of ribosome-associated proteins reveals compositional dynamics in embryonic tissues, cancer cells, and macrophages [RNA-Seq and Ribo-Seq] 12 samples
- GSE248132 LARP6 promotes carcinogenic features of triple negative breast cancer cell line by directly modulating alternative splicing of associated genes 10 samples
- GSE300844 Deciphering the functional impact of Alzheimer’s Disease-associated variants in resting and proinflammatory immune cells 192 samples
- GSE281576 Long-range enhancer-controlled genes are hyper-sensitive to regulatory factor perturbations 54 samples
- GSE240492 Targeting axonal guidance dependencies in glioblastoma with ROBO1 CAR T cells 41 samples
- GSE300304 A platform for multisite immune profiling of premetastatic pancreatic cancer at single cell resolution 30 samples
- GSE282004 Tumor Exosome-transmitted LncRNA CATED Promotes Platinum-resistant in High-grade Serous Ovarian Cancer 17 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.