Signal-responsive transcription factors cooperate to establish alveolar macrophage identity
Direct links to NCBI, no account and no request form: the whole study as GSE243165_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 42 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1016453 and SRA study SRP460294. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 21 samples.
8 replicated groups read from the first 40 of 42 sample titles; they account for 21 of them. Check it against the sample list below before relying on it.
- GSM7780058 Imm_KO2
- GSM7780059 Imm_KO3
- GSM7780060 Imm_KO4
- GSM7780061 mAM_KO1
- GSM7780062 mAM_KO2
- GSM7780063 mAM_KO3
- GSM7780064 mAM_KO4
- GSM7780065 mAM_WT1
- GSM7780066 mAM_WT2
- GSM7780067 mAM_WT3
- GSM7780068 mAM_WT4
- GSM7780087 AMs, KO1_2
- GSM7780088 AMs, KO1_3
- GSM7780089 AMs, KO2
- GSM7780090 AMs, KO3
- GSM7780091 AMs, WT1_2
- GSM7780092 AMs, WT1_3
- GSM7780093 AMs, WT3
- GSM7780094 AMs, WT4
- GSM7780095 AMs, H3
- GSM7780096 AMs, INPUT
- GSM7780097 AMs, WTA
- GSM7780098 AMs, WTG
- GSM7780099 AMs, KOA
- GSM7780100 AMs, KOG
- GSM7780101 AMs, INPUT for RXR HT-ChIPmentation
- GSM8070569 s6, input
- GSM8070570 s7, ChIPmentation
- GSM8070571 s8, input
- GSM8070572 s9, ChIPmentation
- GSM9393774 RBPJ_k1
- GSM9393775 Input_k1
- GSM9393776 RBPJ_k2_AMS1
- GSM9393777 Input_k2_AMS1
- GSM9393778 PPARG_k1
- GSM9393779 Input-k1
- GSM9393780 PPARG_k2_AMS2
- GSM9393781 Input_k2_AMS2
- GSM9393899 H3K27Ac_k1
- GSM9393900 Input, k1
+ 2 more — browse all 42 samples with per-sample file links →
- GSE294389 BMAL1 and YAP cooperate to hijack enhancers and promote inflammation in the aged epidermis 131 samples
- GSE201132 Macrophage 58 samples
- GSE292377 Step-wise signal integration governs adaptive programming of lymphocytes [bulkRNA-seq and ATAC-seq] 41 samples
- GSE281941 Klf5 functions as a multi-lineage reprogramming transcription factor 30 samples
- GSE327645 BACH1 acts as a pioneer repressor to enable macrophage plasticity and adaptation across tissues and inflammatory contexts [RNA-seq/ATAC-seq] 28 samples
- GSE217664 Decoding Trp53 regulatory program in various tissues and organs 404 samples
- GSE296994 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation 174 samples
- GSE312302 NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq 171 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.