FOXA2/AP-1 drives prostate cancer lineage plasticity
Direct links to NCBI, no account and no request form: the whole study as GSE232555_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 101 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA972713 and SRA study SRP437782. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 20 samples.
7 replicated groups read from the first 40 of 101 sample titles; they account for 20 of them. Check it against the sample list below before relying on it.
- GSM7350172 NCI-H660 cells, ORY-1001, ChIP-FOXA2
- GSM7350173 NCI-H660 cells, vehicle, ChIP-FOXA2
- GSM7350174 NCI-H660 cells, siFOXA2, ChIP-JUN
- GSM7350175 NCI-H660 cells, siNC, ChIP-JUN
- GSM7350176 NCI-H660 cells, vehicle, ChIP-H3K4me2
- GSM7350177 NCI-H660 cells, vehicle, ATAC
- GSM7350178 LNCaP_FOXA2OE cells, vehicle, ChIP-FOXA2
- GSM7350179 LNCaP_FOXA2OE cells, vehicle, ChIP-JUN
- GSM7350180 LNCaP cells, siFOXA1, ChIP-JUN
- GSM7350181 LNCaP cells, siNC, ChIP-JUN
- GSM7350182 PC3 cells, C12, ChIP-FOXA2
- GSM7350183 PC3 cells, ORY-1001, ChIP-FOXA2
- GSM7350184 PC3 cells, vehicle, ChIP-FOXA2
- GSM7350185 PC3 cells, siFOXA2, ChIP-FOSL1
- GSM7350186 PC3 cells, siFOXA2, ChIP-JUN
- GSM7350187 PC3 cells, siNC, ChIP-FOSL1
- GSM7350188 PC3 cells, siNC, ChIP-JUN
- GSM7350189 PC3 cells, vehicle, ChIP-H3K27AC
- GSM7350190 PC3 cells, vehicle, ATAC
- GSM7350191 PDX201.1_PDX201.2_PDX_pooled_input
- GSM7350192 PDX201.1, vehicle, ChIP-AR, repeat 1
- GSM7350193 PDX201.1, vehicle, ChIP-AR, repeat 2
- GSM7350194 PDX201.1, vehicle, ChIP-FOXA1, repeat 1
- GSM7350195 PDX201.1, vehicle, ChIP-FOXA1, repeat 2
- GSM7350196 PDX201.1, vehicle, ChIP-FOXA1, repeat 3
- GSM7350197 PDX201.1, vehicle, ChIP-FOXA1, repeat 4
- GSM7350198 PDX201.1, vehicle, ChIP-H3K27Ac, repeat 1
- GSM7350199 PDX201.1, vehicle, ChIP-H3K27Ac, repeat 2
- GSM7350200 PDX201.1, vehicle, ChIP-H3K27Ac, repeat 3
- GSM7350201 PDX201.2, vehicle, ChIP-FOXA2, repeat 1
- GSM7350202 PDX201.2, vehicle, ChIP-FOXA2, repeat 2
- GSM7350203 PDX201.2, vehicle, ChIP-FOXA2, repeat 3
- GSM7350204 PDX201.2, vehicle, ChIP-FOXA2, repeat 4
- GSM7350205 PDX201.2, vehicle, ChIP-H3K27Ac, repeat 1
- GSM7350206 PDX201.2, vehicle, ChIP-H3K27Ac, repeat 2
- GSM7350207 LNCaP_CTL_cells,vehicle, repeat 1
- GSM7350208 LNCaP_CTL_cells,vehicle, repeat 2
- GSM7350209 LNCaP_CTL_cells,vehicle, repeat 3
- GSM7350210 LNCaP_FOXA2OE, vehicle, repeat 1
- GSM7350211 LNCaP_FOXA2OE, vehicle, repeat 2
+ 61 more — browse all 101 samples with per-sample file links →
- GSE282726 FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment 25 samples
- GSE274229 Evolution of myeloid-mediated immunotherapy resistance in prostate cancer 52 samples
- GSE289420 Astrocyte-derived cholesterol drives synaptic gene expression in developing neurons and reciprocal astrocytic transcriptional programs 416 samples
- GSE312574 Unbalanced chromatin binding of Polycomb complexes drives neurodevelopmental disorders 179 samples
- GSE157927 Triptolide Targets Super-Enhancer Networks in Pancreatic Cancer Cells and Cancer Associated Fibroblasts 81 samples
- GSE295336 H2BE113K mutation promotes breast cancer metastasis through modulating chromatin dynamics 77 samples
- GSE292300 A core transcriptional regulatory circuitry controls super-enhancer-driven activation of LGR5 in colorectal cancer: ChIP-seq 76 samples
- GSE291730 KLF4 promotes a KRT13+ hillock-like state in squamous lung cancer 55 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.