The transcriptional role of TG2-mediated H3Q5ser in CRC [ChIP-seq]
Direct links to NCBI, no account and no request form: the whole study as GSE229843_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 16 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA956437 and SRA study SRP432963. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
8 replicated groups read from 16 sample titles; they account for 16 of them. Check it against the sample list below before relying on it.
- GSM7179005 HCT116, H2Bub1, CST, siControl, rep1
- GSM7179006 HCT116, H2Bub1, CST, siControl, rep2
- GSM7179007 HCT116, H2Bub1, CST, siRNF40, rep1
- GSM7179008 HCT116, H2Bub1, CST, siRNF40, rep2
- GSM7179009 HCT116, H3K4me3, Abclonal, siControl, rep1
- GSM7179010 HCT116, H3K4me3, Abclonal, siControl, rep2
- GSM7179011 HCT116, H3K4me3, Abclonal, siRNF40, rep1
- GSM7179012 HCT116, H3K4me3, Abclonal, siRNF40, rep2
- GSM7179013 HCT116, H3K4me3, Abclonal, siTG2, rep1
- GSM7179014 HCT116, H3K4me3, Abclonal, siTG2, rep2
- GSM7179015 HCT116, H3Q5ser, Sigma, siControl, rep1
- GSM7179016 HCT116, H3Q5ser, Sigma, siControl, rep2
- GSM7179017 HCT116, H3Q5ser, Sigma, siRNF40, rep1
- GSM7179018 HCT116, H3Q5ser, Sigma, siRNF40, rep2
- GSM7179019 HCT116, H3Q5ser, Sigma, siTG2, rep1
- GSM7179020 HCT116, H3Q5ser, Sigma, siTG2, rep2
- GSE275631 Characterization of E2F8-mediated transcriptional regulation in lethal prostate cancer 39 samples
- GSE303478 Systematic investigation reveals extensive Epstein-Barr virus transcriptional regulation of the human genome 217 samples
- GSE328578 CBFA2T3-GLIS2 fusion-mediated mSWI/SNF chromatin remodeler disruption generates cancer-specific dependencies in AMKL 156 samples
- GSE306993 Transcriptional and epigenetic targets of MEF2C in human microglia contribute to cellular functions related to autism risk and age-related disease. 76 samples
- GSE253121 NELF prevents transcriptional readthrough into DNA replication zones in cancer cells 70 samples
- GSE318861 Quantitative analysis of Tat-dependent and host-driven HIV transcription by ChIP-seq and RNA-seq 52 samples
- GSE272562 Dynamic activation of rAAV transgene expression by a small molecule that recruits endogenous transcriptional machinery 46 samples
- GSE227974 MY-COMP, an inhibitor of the transcriptional activity of YAP-B-MYB, identifies NEK2 as a novel mediator of YAP oncogenesis in uveal melanoma cells 29 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.