The evolution of the type I IFN transcriptional response across human populations
Direct links to NCBI, no account and no request form: the whole study as GSE217313_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 46 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA898370 and SRA study SRP406336. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 40 samples.
17 replicated groups read from the first 40 of 46 sample titles; they account for 40 of them. Check it against the sample list below before relying on it.
- GSM6710597 PRO-seq, Dave, BSA, 1 hour, rep 1
- GSM6710598 PRO-seq, Dave, BSA, 1 hour, rep 2
- GSM6710599 PRO-seq, Dave, BSA, 1 hour, rep 3
- GSM6710600 PRO-seq, Eric, BSA, 1 hour, rep 1
- GSM6710601 PRO-seq, Eric, BSA, 1 hour, rep 2
- GSM6710602 PRO-seq, Eric, BSA, 1 hour, rep 3
- GSM6710603 PRO-seq, Ethan, BSA, 1 hour, rep 1
- GSM6710604 PRO-seq, Ethan, BSA, 1 hour, rep 2
- GSM6710605 PRO-seq, Ethan, BSA, 1 hour, rep 3
- GSM6710606 PRO-seq, GM12878, BSA, 1 hour, rep 1
- GSM6710607 PRO-seq, GM12878, BSA, 1 hour, rep 2
- GSM6710608 PRO-seq, GM18489, BSA, 1 hour, rep 1
- GSM6710609 PRO-seq, GM18489, BSA, 1 hour, rep 2
- GSM6710610 PRO-seq, GM18530, BSA, 1 hour, rep 1
- GSM6710611 PRO-seq, GM18530, BSA, 1 hour, rep 2
- GSM6710612 PRO-seq, GM19024, BSA, 1 hour, rep 1
- GSM6710613 PRO-seq, GM19024, BSA, 1 hour, rep 2
- GSM6710614 PRO-seq, HG02150, BSA, 1 hour, rep 1
- GSM6710615 PRO-seq, HG02150, BSA, 1 hour, rep 2
- GSM6710616 PRO-seq, HG03077, BSA, 1 hour, rep 1
- GSM6710617 PRO-seq, HG03077, BSA, 1 hour, rep 2
- GSM6710618 PRO-seq, HG03645, BSA, 1 hour, rep 1
- GSM6710619 PRO-seq, HG03645, BSA, 1 hour, rep 2
- GSM6710620 PRO-seq, Dave, IFNB, 1 hour, rep 1
- GSM6710621 PRO-seq, Dave, IFNB, 1 hour, rep 2
- GSM6710622 PRO-seq, Dave, IFNB, 1 hour, rep 3
- GSM6710623 PRO-seq, Eric, IFNB, 1 hour, rep 1
- GSM6710624 PRO-seq, Eric, IFNB, 1 hour, rep 2
- GSM6710625 PRO-seq, Eric, IFNB, 1 hour, rep 3
- GSM6710626 PRO-seq, Ethan, IFNB, 1 hour, rep 1
- GSM6710627 PRO-seq, Ethan, IFNB, 1 hour, rep 2
- GSM6710628 PRO-seq, Ethan, IFNB, 1 hour, rep 3
- GSM6710629 PRO-seq, GM12878, IFNB, 1 hour, rep 1
- GSM6710630 PRO-seq, GM12878, IFNB, 1 hour, rep 2
- GSM6710631 PRO-seq, GM18489, IFNB, 1 hour, rep 1
- GSM6710632 PRO-seq, GM18489, IFNB, 1 hour, rep 2
- GSM6710633 PRO-seq, GM18530, IFNB, 1 hour, rep 1
- GSM6710634 PRO-seq, GM18530, IFNB, 1 hour, rep 2
- GSM6710635 PRO-seq, GM19024, IFNB, 1 hour, rep 1
- GSM6710636 PRO-seq, GM19024, IFNB, 1 hour, rep 2
+ 6 more — browse all 46 samples with per-sample file links →
- GSE267239 Disruption of the Integrator complex triggers the Integrated Stress Response through formation of double-stranded RNA 57 samples
- GSE309511 Independent cell type-specific expression and distal regulation of the 9p21 locus cell cycle regulators: p14ARF, p16INK4A, p15INK4A, and ANRIL [CRISPR and scRNA-seq] 32 samples
- GSE305618 Repeats mimic pathogen-associated patterns across a vast evolutionary landscape [RIP-Seq] 16 samples
- GSE270126 Divergent medulloblastoma chromatin states disclose KDM2B as a selective dependency. 219 samples
- GSE300844 Deciphering the functional impact of Alzheimer’s Disease-associated variants in resting and proinflammatory immune cells 192 samples
- GSE310353 In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment 116 samples
- GSE307215 Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease 104 samples
- GSE308629 Pooled CRISPR screens identify genes and non-coding genomic regions that regulate red blood cell density 99 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.