Cohesin loading at regulatory elements shapes 3D genome folding during erythropoiesis [RNA-Seq]
Direct links to NCBI, no account and no request form: the whole study as GSE341753_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 12 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1503805 and SRA study SRP722300. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
6 replicated groups read from 12 sample titles; they account for 12 of them. Check it against the sample list below before relying on it.
- GSM9916473 AAVS1, RNA-Seq, Donor 1
- GSM9916474 AAVS1, RNA-Seq, Donor 2
- GSM9916475 NFE2-KO, RNA-Seq, Donor 1
- GSM9916476 NFE2-KO, RNA-Seq, Donor 2
- GSM9916477 STAG1-KO, RNA-Seq, Donor 3, Condition 1
- GSM9916478 STAG1-KO, RNA-Seq, Donor 3, Condition 2
- GSM9916479 STAG2-KO, RNA-Seq, Donor 3, Condition 1
- GSM9916480 STAG2-KO, RNA-Seq, Donor 3, Condition 2
- GSM9916481 NIPBL-KO, RNA-Seq, Donor 3, Condition 1
- GSM9916482 NIPBL-KO, RNA-Seq, Donor 3, Condition 2
- GSM9916483 AAVS1, RNA-Seq, Donor 3, Condition 1
- GSM9916484 AAVS1, RNA-Seq, Donor 3, Condition 2
- GSE314342 Genome-scale perturb-seq in primary human CD4+ T cells reveals genes regulating T cell programs and human immune traits. 577 samples
- GSE205672 Transcriptomes of human PBMCs and monocytes in sepsis patients 460 samples
- GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples
- GSE309595 Longitudinal Analysis of Multiple Myeloma: Therapeutic Response and Immune Microenvironment Dynamics in the Context of Tumor Heterogeneity [scRNA-seq] 270 samples
- GSE243013 A single-cell atlas of immune heterogeneity in anti-PD1-treated non-small cell lung cancer 243 samples
- GSE263733 Single-cell transcriptome analysis reveals subtype-specific clonal evolution and microenvironmental changes in liver metastasis of pancreatic adenocarcinoma and their clinical implications 218 samples
- GSE282122 A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease 216 samples
- GSE284666 SenCat: Redefining human cell senescence through multiomic profiling of multiple senescent cell types 190 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.