Extracellular matrix reprogramming by the YAP/TAZ/TGF-ß2 axis drives immune exclusion in cholangiocarcinoma models
Direct links to NCBI, no account and no request form: the whole study as GSE301501_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 45 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1285336 and SRA study SRP597423. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 34 samples.
9 replicated groups read from the first 40 of 45 sample titles; they account for 34 of them. Check it against the sample list below before relying on it.
- GSM9084100 shRen_1
- GSM9084101 shRen_2
- GSM9084102 shRen_3
- GSM9084103 shRen_4
- GSM9084104 shYT#1_1
- GSM9084105 shYT#1_2
- GSM9084106 shYT#2_1
- GSM9084107 shYT#2_2
- GSM9084161 shRen
- GSM9084162 shYT
- GSM9084163 shRen_ctrl
- GSM9084164 shRen_anti_PD1
- GSM9084165 shYT_ctrl
- GSM9084166 shYT_anti_PD1
- GSM9084167 shRen_YAP_1
- GSM9084168 shRen_Tead1_1
- GSM9084169 shRen_H3K27Ac_1
- GSM9084170 shRen_H3K4me1_1
- GSM9084171 shRen_IgG_1
- GSM9084172 shRen_YAP_2
- GSM9084173 shRen_Tead1_2
- GSM9084174 shRen_H3K27Ac_2
- GSM9084175 shRen_H3K4me1_2
- GSM9084176 shRen_IgG_2
- GSM9084177 shRen_YAP_3
- GSM9084178 shRen_Tead1_3
- GSM9084179 shRen_H3K27Ac_3
- GSM9084180 shRen_H3K4me1_3
- GSM9084181 shRen_IgG_3
- GSM9084182 shRen_YAP_4
- GSM9084183 shRen_Tead1_4
- GSM9084184 shRen_H3K27Ac_4
- GSM9084185 shRen_H3K4me1_4
- GSM9084186 shRen_IgG_4
- GSM9084202 [ATAC-Seq] shRen_1
- GSM9084203 [ATAC-Seq] shRen_2
- GSM9084204 [ATAC-Seq] shRen_3
- GSM9084205 [ATAC-Seq] shRen_4
- GSM9084206 [ATAC-Seq] shRen_5
- GSM9084207 [ATAC-Seq] shYT#2_1
+ 5 more — browse all 45 samples with per-sample file links →
- GSE274969 Genetic variation in the activity of a TREM2-p53 signaling axis determines oxygeninduced lung injury 77 samples
- GSE294258 Intracellular iron homeostasis-regulated epigenetic reprogramming contributes to -7/del(7q) leukemia 71 samples
- GSE267452 Loss of Nuclear Receptor Nr4a3 Alleviates Cellular Senescence to Promote Adult Direct Cardiac Reprogramming 54 samples
- GSE341379 Distinct histone 3 lysine methylation states underlie tumor immune surveillance 50 samples
- GSE281941 Klf5 functions as a multi-lineage reprogramming transcription factor 30 samples
- GSE333887 Matched single-cell chromatin, transcriptome, and surface marker profiling captures in vivo epigenomic reprogramming during basal-to-luminal transition in the mammary gland [transplantations_OneCell_multiome] 14 samples
- GSE217664 Decoding Trp53 regulatory program in various tissues and organs 404 samples
- GSE296994 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation 174 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.