Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis [PROX1 CUT&RUN Liver/MEF/Hep3B]
Direct links to NCBI, no account and no request form: the whole study as GSE284653_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 22 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1199996 and SRA study SRP552484. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 22 samples.
6 replicated groups read from 22 sample titles; they account for 22 of them. Check it against the sample list below before relying on it.
- GSM8689863 Hep3B Flag rep 1
- GSM8689864 Hep3B Flag rep 2
- GSM8689865 Hep3B Flag rep 3
- GSM8689866 Hep3B IgG rep 1
- GSM8689867 Hep3B IgG rep 2
- GSM8689868 Hep3B IgG rep 3
- GSM8689869 MEF Flag rep 1
- GSM8689870 MEF Flag rep 2
- GSM8689871 MEF Flag rep 3
- GSM8689872 MEF IgG rep 1
- GSM8689873 MEF IgG rep 2
- GSM8689874 MEF IgG rep 3
- GSM8689875 Liver Prox1 rep 1
- GSM8689876 Liver Prox1 rep 2
- GSM8689877 Liver Prox1 rep 3
- GSM8689878 Liver Prox1 rep 4
- GSM8689879 Liver Prox1 rep 5
- GSM8689880 Liver IgG rep 1
- GSM8689881 Liver IgG rep 2
- GSM8689882 Liver IgG rep 3
- GSM8689883 Liver IgG rep 4
- GSM8689884 Liver IgG rep 5
- GSE320163 Minimizing far-extending chromatin perturbation in genome editing preserves stem cell identity [ATAC-Seq] 377 samples
- GSE286875 Improved spike-in normalization clarifies the relationship between active histone modifications and transcription 244 samples
- GSE281961 Opposing lineage specifiers induce a pro-tumor hybrid-identity state in lung adenocarcinoma [ChIP-seq] 60 samples
- GSE320165 Minimizing far-extending chromatin perturbation in genome editing preserves stem cell identity [Cut&Tag] 46 samples
- GSE277417 Non-canonical PRC1.1 licenses transcriptional response to enable Treg plasticity in immune adaptation [CUT&TAG] 38 samples
- GSE294572 HNF4a controls growth, identity and response to KRAS inhibition in IMA [ChIP- seq] 38 samples
- GSE289247 Crosstalk between the polycomb repressive complex 2 and DNA methylation mediates neuroendocrine prostate cancer lineage plasticity [ChIP-Seq] 35 samples
- GSE232552 FOXA2/AP-1 drives prostate cancer lineage plasticity [ChIP-seq] 24 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.