Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling [CUT&RUN]
Direct links to NCBI, no account and no request form: the whole study as GSE278910_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 30 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1169554 and SRA study SRP536880. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 30 samples.
6 replicated groups read from 30 sample titles; they account for 30 of them. Check it against the sample list below before relying on it.
- GSM8557337 NT_H2AZ_1
- GSM8557338 NT_H2AZ_2
- GSM8557339 NT_H2AZ_3
- GSM8557340 NT_H2AZ_4
- GSM8557341 NT_H2AZ_5
- GSM8557342 NT_H3K4me3_1
- GSM8557343 NT_H3K4me3_2
- GSM8557344 NT_H3K4me3_3
- GSM8557345 NT_H3K4me3_4
- GSM8557346 NT_H3K4me3_5
- GSM8557347 NT_IgG_1
- GSM8557348 NT_IgG_2
- GSM8557349 NT_IgG_3
- GSM8557350 NT_IgG_4
- GSM8557351 NT_IgG_5
- GSM8557352 ZNHIT1_H2AZ_1
- GSM8557353 ZNHIT1_H2AZ_2
- GSM8557354 ZNHIT1_H2AZ_3
- GSM8557355 ZNHIT1_H2AZ_4
- GSM8557356 ZNHIT1_H2AZ_5
- GSM8557357 ZNHIT1_H3K4me3_1
- GSM8557358 ZNHIT1_H3K4me3_2
- GSM8557359 ZNHIT1_H3K4me3_3
- GSM8557360 ZNHIT1_H3K4me3_4
- GSM8557361 ZNHIT1_H3K4me3_5
- GSM8557362 ZNHIT1_IgG_1
- GSM8557363 ZNHIT1_IgG_2
- GSM8557364 ZNHIT1_IgG_3
- GSM8557365 ZNHIT1_IgG_4
- GSM8557366 ZNHIT1_IgG_5
- GSE327821 Single-molecule, single-cell profiling of linked chromatin states [Single_cell_CoCUT&Tag] 200 samples
- GSE287902 BPTF regulstes androgen receptor activity by enhancing chromatin accessibility and stabilizing the AR-FOXA1 interaction [Cut&Run] 40 samples
- GSE316389 Chromatin accessibility and gene expression profiling of primary and metastatic ER+ breast cancer [ATAC-seq] 36 samples
- GSE325835 BATF3 regulates chromatin accessibility during CD8+ T lymphocyte differentiation 36 samples
- GSE327819 Single-molecule, single-cell profiling of linked chromatin states [Bulk_CoCUT&Tag] 35 samples
- GSE337829 Integrated single-cell profiling of RNA and DNA interactomes reveals targetable chromatin architectures in cancer [ChIP-Seq] 32 samples
- GSE270602 Comparative analysis of chromatin accessibility during chondrogenesis and in osteoarthritis 26 samples
- GSE142751 Genome-wide maps of chromatin state in 142 cancer cell lines [cell line] 855 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.