GEO series
Spatial transcriptomic analysis of tumor heterogeneity in HPV+ and HPV- Head and Neck Squamous Cell Carcinoma
GSE268014
Homo sapiens
Other; Expression profiling by high throughput sequencing
39 samples
Submitted 2026/06/24
Platform GPL24676
Summary
Head and neck squamous cell carcinoma is the 6th most common malignancy worldwide. We performed spatial transcriptomics to profile intra- and inter-tumor heterogeneity. We identified recurring patterns of spatial gene expression that co-localize in subsets of tumors.
This dataset
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Direct links to NCBI, no account and no request form: the whole study as GSE268014_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 39 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA1114040 and SRA study SRP508955. Searching any of these in the dataset finder brings you back here.
Study design
39 conditions, each sampled once — no replicated groups
Read from 39 sample titles: 39 distinct titles with little repetition. Check it against the sample list below before relying on it.
Samples in this study
0 selected
- GSM8283897 P5909, spatial transcriptomics
- GSM8283898 P5903, spatial transcriptomics
- GSM8283899 P5767, spatial transcriptomics
- GSM8283900 P5766, spatial transcriptomics
- GSM8283901 P5764, spatial transcriptomics
- GSM8283902 P5756, spatial transcriptomics
- GSM8283903 P5751, spatial transcriptomics
- GSM8283904 P5736, spatial transcriptomics
- GSM8283905 P5735, spatial transcriptomics
- GSM8283906 P5710, spatial transcriptomics
- GSM8283907 P5709, spatial transcriptomics
- GSM8283908 P5707, spatial transcriptomics
- GSM8283909 P5692, spatial transcriptomics
- GSM8283910 P5684, spatial transcriptomics
- GSM8283911 P5666, spatial transcriptomics
- GSM8283912 P5659, spatial transcriptomics
- GSM8283913 P5636, spatial transcriptomics
- GSM8283914 P5624, spatial transcriptomics
- GSM8283915 P5612, spatial transcriptomics
- GSM8283916 P5469, spatial transcriptomics
- GSM8283917 P5456, replicate 1, spatial transcriptomics
- GSM8283918 P5448, spatial transcriptomics
- GSM8283919 P5418, spatial transcriptomics
- GSM8283920 P5219, spatial transcriptomics
- GSM8283921 P5217, spatial transcriptomics
- GSM8348695 P5457_1, spatial transcriptomics
- GSM8693473 P5666 scRNA-seq library
- GSM8693474 P5684 scRNA-seq library
- GSM8693475 P5710 scRNA-seq library
- GSM8693476 P5735 scRNA-seq library
- GSM8693477 P5736 scRNA-seq library
- GSM8693478 P5751 scRNA-seq library
- GSM8693479 P5418 scRNA-seq library
- GSM8693480 P5448 scRNA-seq library
- GSM8693481 P5469 scRNA-seq library
- GSM8693482 P5219 scRNA-seq library
- GSM8693483 P5217 scRNA-seq library
- GSM9701483 P5684, high resolution spatial transcriptomics
- GSM9701484 P5624, high resolution spatial transcriptomics
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