Epiregulon: Inference of single-cell transcription factor activity to dissect mechanisms of lineage plasticity and drug response
Direct links to NCBI, no account and no request form: the whole study as GSE252883_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 38 samples.
Also filed as BioProject PRJNA1062865. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 20 samples.
10 replicated groups read from 38 sample titles; they account for 20 of them. Check it against the sample list below before relying on it.
- GSM7990798 VCaP, GEX
- GSM7990799 LNCaP, GEX
- GSM7990800 VCaP, ATAC, 1
- GSM7990801 VCaP, ATAC, 2
- GSM7990802 LNCaP, ATAC, 1
- GSM7990803 LNCaP, ATAC, 2
- GSM7990804 VCaP, HTO
- GSM7990805 LNCaP, HTO
- GSM7990806 H660, GEX
- GSM7990807 H660, ATAC
- GSM7990808 H660, HTO
- GSM7990809 DU145, GEX
- GSM7990810 DU145, ATAC
- GSM7990811 DU145, HTO
- GSM7990812 LNCaP, GEX
- GSM7990813 LNCaP, ATAC
- GSM7990814 LNCaP, HTO
- GSM8605967 DU145, DMSO, input
- GSM8605968 DU145, DMSO, SMARCA4
- GSM8605969 DU145, DMSO, FOSL1
- GSM8605970 DU145, DMSO, TEAD1
- GSM8605971 DU145, SMARCA2/4 degrader, input
- GSM8605972 DU145, SMARCA2/4 degrader, SMARCA4
- GSM8605973 DU145, SMARCA2/4 degrader, FOSL1
- GSM8605974 DU145, SMARCA2/4 degrader, TEAD1
- GSM8605975 MDA-PCa-2b, DMSO, SMARCA4, rep1
- GSM8605976 MDA-PCa-2b, DMSO, SMARCA4, rep2
- GSM8605977 MDA-PCa-2b, SMARCA2/4 degrader, SMARCA4, rep1
- GSM8605978 MDA-PCa-2b, SMARCA2/4 degrader, SMARCA4, rep2
- GSM8605979 MDA-PCa-2b, DMSO, AR, rep1
- GSM8605980 MDA-PCa-2b, DMSO, AR, rep2
- GSM8605981 MDA-PCa-2b, SMARCA2/4 degrader, AR, rep1
- GSM8605982 MDA-PCa-2b, SMARCA2/4 degrader, AR, rep2
- GSM8605983 MDA-PCa-2b, DMSO, FOXA1, rep1
- GSM8605984 MDA-PCa-2b, DMSO, FOXA1, rep2
- GSM8605985 MDA-PCa-2b, SMARCA2/4 degrader, FOXA1, rep1
- GSM8605986 MDA-PCa-2b, SMARCA2/4 degrader, FOXA1, rep2
- GSM8605987 MDA-PCa-2b, input
- GSE270503 Epigenetic heterogeneity and state-specific transcriptional programs determine differential drug response in osteosarcoma [Cut&Run] 56 samples
- GSE274113 Transcription factor networks disproportionately enrich for heritability of blood cell phenotypes [10x ATAC + GEX Multiome] 42 samples
- GSE295174 Multi-modal single-cell sequencing reveals network transition in circulating monocytes that aligns with faster recovery in trauma patients and favors a response to M-CSF 16 samples
- GSE307817 A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease 12 samples
- GSE309979 GeoMx GeoMx-DSP Toxic Lipid-induced Epigenetic Activation of ICAM1 in Liver Sinusoidal Endothelium Regulates Myeloid-Driven Fibro-inflammatory Response in MASH 217 samples
- GSE282510 Multi-omics analysis in primary T cells elucidates mechanisms behind disease associated genetic loci [Hi-C] 108 samples
- GSE204911 Mapping genotypes to chromatin accessibility profiles in single cells [Genotyping GoT-ChA amplicon] 27 samples
- GSE251977 Drug treatment 14 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.